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 population activity






6 Supplementary material All spiking network simulations were run using Auryn [

Neural Information Processing Systems

Network simulations performed in fSBI were distributed over 300 cores from four workstations for two months. The resulting 1D signal was Fourier-transformed. Fano factor was computed per neuron, then averaged over windows. We also do not correct for the change in prior at each round. We here clarify the relationship between the pseudo-posterior obtained from fSBI and the corresponding true Bayesian posterior. New metrics only at each round: We recall from Eqns. 10 that after two rounds of filtering, fSBI Note that the true Bayesian posterior after two rounds would be, using Bayes' rule: p The diagonals show the distribution of values for each plasticity parameter.


Continuous-Time Homeostatic Dynamics for Reentrant Inference Models

arXiv.org Machine Learning

We formulate the Fast-Weights Homeostatic Reentry Network (FHRN) as a continuous-time neural-ODE system, revealing its role as a norm-regulated reentrant dynamical process. Starting from the discrete reentry rule $x_t = x_t^{(\mathrm{ex})} + ฮณ\, W_r\, g(\|y_{t-1}\|)\, y_{t-1}$, we derive the coupled system $\dot{y}=-y+f(W_ry;\,x,\,A)+g_{\mathrm{h}}(y)$ showing that the network couples fast associative memory with global radial homeostasis. The dynamics admit bounded attractors governed by an energy functional, yielding a ring-like manifold. A Jacobian spectral analysis identifies a \emph{reflective regime} in which reentry induces stable oscillatory trajectories rather than divergence or collapse. Unlike continuous-time recurrent neural networks or liquid neural networks, FHRN achieves stability through population-level gain modulation rather than fixed recurrence or neuron-local time adaptation. These results establish the reentry network as a distinct class of self-referential neural dynamics supporting recursive yet bounded computation.


Know Thyself by Knowing Others: Learning Neuron Identity from Population Context

arXiv.org Artificial Intelligence

Neurons process information in ways that depend on their cell type, connectivity, and the brain region in which they are embedded. However, inferring these factors from neural activity remains a significant challenge. To build general-purpose representations that allow for resolving information about a neuron's identity, we introduce NuCLR, a self-supervised framework that aims to learn representations of neural activity that allow for differentiating one neuron from the rest. NuCLR brings together views of the same neuron observed at different times and across different stimuli and uses a contrastive objective to pull these representations together. To capture population context without assuming any fixed neuron ordering, we build a spatiotemporal transformer that integrates activity in a permutation-equivariant manner. Across multiple electrophysiology and calcium imaging datasets, a linear decoding evaluation on top of NuCLR representations achieves a new state-of-the-art for both cell type and brain region decoding tasks, and demonstrates strong zero-shot generalization to unseen animals. We present the first systematic scaling analysis for neuron-level representation learning, showing that increasing the number of animals used during pretraining consistently improves downstream performance. The learned representations are also label-efficient, requiring only a small fraction of labeled samples to achieve competitive performance. These results highlight how large, diverse neural datasets enable models to recover information about neuron identity that generalize across animals. Code is available at https://github.com/nerdslab/nuclr.



Concept-Guided Interpretability via Neural Chunking

arXiv.org Artificial Intelligence

Neural networks are often described as black boxes, reflecting the significant challenge of understanding their internal workings and interactions. We propose a different perspective that challenges the prevailing view: rather than being inscrutable, neural networks exhibit patterns in their raw population activity that mirror regularities in the training data. We refer to this as the Reflection Hypothesis and provide evidence for this phenomenon in both simple recurrent neural networks (RNNs) and complex large language models (LLMs). Building on this insight, we propose to leverage our cognitive tendency of chunking to segment high-dimensional neural population dynamics into interpretable units that reflect underlying concepts. We propose three methods to extract recurring chunks on a neural population level, complementing each other based on label availability and neural data dimensionality. Discrete sequence chunking (DSC) learns a dictionary of entities in a lower-dimensional neural space; population averaging (PA) extracts recurring entities that correspond to known labels; and unsupervised chunk discovery (UCD) can be used when labels are absent. We demonstrate the effectiveness of these methods in extracting concept-encoding entities agnostic to model architectures. These concepts can be both concrete (words), abstract (POS tags), or structural (narrative schema). Additionally, we show that extracted chunks play a causal role in network behavior, as grafting them leads to controlled and predictable changes in the model's behavior. Our work points to a new direction for interpretability, one that harnesses both cognitive principles and the structure of naturalistic data to reveal the hidden computations of complex learning systems, gradually transforming them from black boxes into systems we can begin to understand.